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[SCA] SCA-based code improvements.

jopa-api/src/main/java/cz/cvut/kbss/jopa/model/annotations/OWLClass.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/oom/PendingReferenceRegistryTest.java jopa-integration-tests-jena/src/test/java/cz/cvut/kbss/jopa/test/integration/jena/CreateOperationsTest.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/query/mapper/ResultRowMapperTest.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/connector/BasicStorageConnectorTest.java jopa-api/src/main/java/cz/cvut/kbss/jopa/model/annotations/ParticipationConstraint.java ontodriver-api/src/test/java/cz/cvut/kbss/ontodriver/iteration/ResultSetIteratorTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/container/ContainerHandler.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/query/LiveOntologyStatementExecutor.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/list/ReferencedListIteratorTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/AxiomSaver.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/list/OwlapiListIteratorBase.java ontodriver-jena/src/main/java/cz/cvut/kbss/ontodriver/jena/connector/SubjectPredicateContext.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/MainAxiomLoaderTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/MainAxiomLoader.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/query/mapper/ResultSetMappingProcessorTest.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/AxiomSaverTest.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/utils/IdentifierTransformerTest.java jopa-api/src/main/java/cz/cvut/kbss/jopa/exceptions/AttributeModificationForbiddenException.java ontodriver-jena/src/test/java/cz/cvut/kbss/ontodriver/jena/connector/ReadCommittedConnectorFactoryTest.java ontodriver-rdf4j/src/test/java/cz/cvut/kbss/ontodriver/rdf4j/util/Rdf4jUtilsTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/list/SimpleListIterator.java ontodriver-jena/src/test/java/cz/cvut/kbss/ontodriver/jena/connector/SnapshotConnectorFactoryTest.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/model/metamodel/ConverterResolverTest.java jopa-api/src/main/java/cz/cvut/kbss/jopa/model/query/criteria/PredicateFactory.java ontodriver-jena/src/test/java/cz/cvut/kbss/ontodriver/jena/connector/InferenceConnectorFactoryTest.java ontodriver-jena/src/main/java/cz/cvut/kbss/ontodriver/jena/connector/SharedStorageConnector.java ontodriver-jena/src/test/java/cz/cvut/kbss/ontodriver/jena/connector/ConnectorFactoryTestBase.java ontodriver-rdf4j/src/test/java/cz/cvut/kbss/ontodriver/rdf4j/query/SelectResultSetTest.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/list/ListTestHelper.java jopa-integration-tests/src/main/java/cz/cvut/kbss/jopa/test/runner/UpdateOperationsRunner.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/EpistemicAxiomRemoverTest.java ontodriver-rdf4j/src/test/java/cz/cvut/kbss/ontodriver/rdf4j/AxiomLoaderTest.java jopa-api/src/main/java/cz/cvut/kbss/jopa/model/annotations/FieldResult.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/model/metamodel/ClassFieldMetamodelProcessorTest.java jopa-api/src/main/java/cz/cvut/kbss/jopa/model/query/Parameter.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/oom/PendingReferenceRegistry.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/query/mapper/ConstructorResultMapperTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/list/InferredSimpleListIterator.java ontodriver-jena/src/main/java/cz/cvut/kbss/ontodriver/jena/connector/SnapshotStorage.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/oom/ObjectOntologyMapperImpl.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/list/SimpleListHandler.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/list/SimpleListHandlerTest.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/oom/PendingAssertion.java jopa-integration-tests/src/main/java/cz/cvut/kbss/jopa/test/environment/util/ContainsSameEntities.java jopa-owl2java/src/main/java/cz/cvut/kbss/jopa/owl2java/IntegrityConstraintClassParser.java ontodriver-rdf4j/src/test/java/cz/cvut/kbss/ontodriver/rdf4j/Rdf4jStatementTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/EpistemicAxiomRemover.java jopa-integration-tests/src/main/java/cz/cvut/kbss/jopa/test/runner/UpdateOperationsWithInheritanceRunner.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/list/ReferencedListHandler.java jopa-owl2java/src/main/java/cz/cvut/kbss/jopa/owl2java/JavaTransformer.java jopa-owl2java/src/test/java/cz/cvut/kbss/jopa/owl2java/JavaTransformerTest.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/query/mapper/VariableResultMapperTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/list/InferredReferencedListIterator.java jopa-api/src/main/java/cz/cvut/kbss/jopa/model/annotations/OWLObjectProperty.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/list/ReferencedListIterator.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/OwlapiAdapterTest.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/query/AbstractResultSetTest.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/list/SimpleListIteratorTest.java ontodriver-rdf4j/src/test/java/cz/cvut/kbss/ontodriver/rdf4j/Rdf4jConnectionTest.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/list/ReferencedListHandlerTest.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/sessions/cache/EntityCache.java modelgen/src/test/java/cz/test/ex/TestingClassOWL.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/ExplicitAxiomLoader.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/oom/converter/CharacterConverter.java jopa-api/src/main/java/cz/cvut/kbss/jopa/model/annotations/Id.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/TypesHandlerTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/TypesHandler.java jopa-integration-tests/src/main/java/cz/cvut/kbss/jopa/test/query/QueryTestEnvironment.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/connector/BasicStorageConnector.java jopa-integration-tests-jena/src/test/java/cz/cvut/kbss/jopa/test/query/jena/TypedQueryTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/OwlapiAdapter.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/connector/OntologySnapshot.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/oom/converter/StringEnumConverterTest.java ontodriver-jena/src/main/java/cz/cvut/kbss/ontodriver/jena/connector/LocalModel.java ontodriver-jena/src/test/java/cz/cvut/kbss/ontodriver/jena/query/AskResultSetTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/InferredAxiomLoader.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/container/ContainerHandlerTest.java ontodriver-jena/src/test/java/cz/cvut/kbss/ontodriver/jena/JenaDriverTest.java jopa-owl2java/src/main/java/cz/cvut/kbss/jopa/owl2java/IntegrityConstraintParser.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/model/metamodel/AbstractIdentifiableTypeTest.java ontodriver-jena/src/test/java/cz/cvut/kbss/ontodriver/jena/query/SelectResultSetTest.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/oom/SingularAnnotationPropertyStrategyTest.java jopa-owl2java/src/main/java/cz/cvut/kbss/jopa/owl2java/ObjectModel.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/model/HintTest.java jopa-integration-tests-jena/src/test/java/cz/cvut/kbss/jopa/test/query/jena/PolymorphicSelectQueryTest.java ontodriver-rdf4j/src/test/java/cz/cvut/kbss/ontodriver/rdf4j/Rdf4jPropertiesTest.java ontodriver-jena/src/main/java/cz/cvut/kbss/ontodriver/jena/connector/SnapshotStorageConnector.java jopa-integration-tests/src/main/java/cz/cvut/kbss/jopa/test/query/runner/PolymorphicSelectQueryRunner.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/query/TransactionalStatementExecutor.java jopa-owl2java/src/main/java/cz/cvut/kbss/jopa/owl2java/OWL2JavaTransformer.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/sessions/ReadOnlyUnitOfWork.java datatype/src/test/java/cz/cvut/kbss/jopa/datatype/DatatypeTransformerTest.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/oom/converter/CharacterConverterTest.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/proxy/change/ChangeTrackingIndirectMapTest.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/PropertiesHandlerTest.java

Martin Ledvinka at 12:38 PM 5/29/25

[SCA] More SCA-based code improvements.

jopa-impl/src/test/java/cz/cvut/kbss/jopa/query/mapper/VariableResultMapperTest.java ontodriver-api/src/main/java/cz/cvut/kbss/ontodriver/exception/OntoDriverException.java ontodriver-api/src/main/java/cz/cvut/kbss/ontodriver/Wrapper.java CHANGELOG.md jopa-impl/src/main/java/cz/cvut/kbss/jopa/model/metamodel/AbstractIdentifiableType.java jopa-maven-plugin/README.md jopa-impl/src/main/java/cz/cvut/kbss/jopa/sessions/ReadOnlyUnitOfWork.java jopa-integration-tests-owlapi/src/test/java/cz/cvut/kbss/jopa/test/integration/owlapi/DeleteOperationsTest.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/sessions/AbstractSession.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/query/StatementExecutorFactory.java jopa-api/src/test/java/cz/cvut/kbss/jopa/model/descriptors/EntityDescriptorTest.java ontodriver-jena/src/test/java/cz/cvut/kbss/ontodriver/jena/list/ReferencedListHandlerTest.java ontodriver-rdf4j/src/main/java/cz/cvut/kbss/ontodriver/rdf4j/exception/Rdf4jDriverException.java ontodriver-api/src/main/java/cz/cvut/kbss/ontodriver/model/NamedResource.java jopa-integration-tests/src/main/java/cz/cvut/kbss/jopa/test/runner/MultipleInheritanceTestRunner.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/query/parameter/ParameterValueFactoryTest.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/sessions/ReadOnlyUnitOfWorkTest.java jopa-integration-tests/src/main/java/cz/cvut/kbss/jopa/test/environment/TestEnvironment.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/exception/OntologyStorageException.java ontodriver-rdf4j/src/test/java/cz/cvut/kbss/ontodriver/rdf4j/list/ReferencedListHandlerTest.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/exception/ReasonerNotAvailableException.java jopa-api/src/main/java/cz/cvut/kbss/jopa/model/DefaultPersistenceProviderResolver.java jopa-api/src/main/java/cz/cvut/kbss/jopa/model/metamodel/IdentifiableType.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/model/metamodel/ConverterResolver.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/model/metamodel/SingularAttributeImpl.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/sessions/AbstractUnitOfWork.java datatype/src/main/java/cz/cvut/kbss/jopa/datatype/DatatypeTransformer.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/model/HintTest.java jopa-api/src/main/java/cz/cvut/kbss/jopa/model/metamodel/SingularAttribute.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/change/TransactionalChange.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/environment/listener/MappedSuperclassListener.java ontodriver-api/src/main/java/cz/cvut/kbss/ontodriver/exception/UnassignableIdentifierException.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/exception/OntologySnapshotException.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/model/metamodel/PluralQueryAttributeImpl.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/sessions/OnCommitChangePropagatingUnitOfWork.java ontodriver-jena/src/main/java/cz/cvut/kbss/ontodriver/jena/config/JenaOntoDriverProperties.java ontodriver-owlapi/src/test/java/cz/cvut/kbss/ontodriver/owlapi/OwlapiAdapterTest.java jopa-impl/src/main/java/cz/cvut/kbss/jopa/model/metamodel/ClassFieldMetamodelProcessor.java jopa-integration-tests/src/main/java/cz/cvut/kbss/jopa/test/runner/RetrieveWithInferenceRunner.java ontodriver-api/src/main/java/cz/cvut/kbss/ontodriver/OntologyStorageProperties.java ontodriver-owlapi/src/main/java/cz/cvut/kbss/ontodriver/owlapi/exception/OwlapiDriverException.java ontodriver-api/src/main/java/cz/cvut/kbss/ontodriver/exception/OntoDriverInitializationException.java jopa-impl/src/test/java/cz/cvut/kbss/jopa/oom/EntityDeconstructorTest.java

Martin Ledvinka at 1:37 PM 5/29/25

[Upd] Update Jena to 5.4.0.

ontodriver-jena/pom.xml

Martin Ledvinka at 2:10 PM 5/29/25

[Chore] Add SCM to all submodules so that Maven central points to correct GH repository

jopa-api/pom.xml ontodriver-api/pom.xml jopa-distribution/pom.xml ontodriver-owlapi/pom.xml ontodriver-jena/pom.xml ontodriver-virtuoso/pom.xml jopa-impl/pom.xml pom.xml datatype/pom.xml jopa-owl2java/pom.xml jopa-maven-plugin/pom.xml jopa-owlapi-utils/pom.xml ontodriver-rdf4j/pom.xml modelgen/pom.xml

Martin Ledvinka at 2:17 PM 5/29/25

[2.4.0] Bump version, update changelog.

ontodriver-jena/pom.xml ontodriver-api/pom.xml jopa-impl/pom.xml ontodriver-owlapi/pom.xml jopa-integration-tests-owlapi/pom.xml jopa-owlapi-utils/pom.xml jopa-api/pom.xml datatype/pom.xml jopa-integration-tests-rdf4j/pom.xml modelgen/pom.xml ontodriver-rdf4j/pom.xml CHANGELOG.md jopa-distribution/pom.xml jopa-integration-tests-jena/pom.xml jopa-owl2java/pom.xml pom.xml jopa-integration-tests-virtuoso/pom.xml ontodriver-virtuoso/pom.xml jopa-integration-tests/pom.xml jopa-maven-plugin/pom.xml

Martin Ledvinka at 2:29 PM 5/29/25