Changes

Summary

1. [Upd] Update Antlr, remove dependency on JGraphT. (commit: 33b2290) (details)
2. [Enhancement #145] Add dependency on ByteBuddy. (commit: f3f19ba) (details)
3. [Enhancement #145] Extract Manageable interface into its own file. (commit: 5d99b52) (details)
4. [Enhancement #145] Implement POC of generating entity classes using ByteBuddy. (commit: abdd95e) (details)
5. [Enhancement #145] Refactor entity instantiation to prepare for introducing a generated subclass. (commit: 0149a66) (details)
6. [Enhancement #145] Add generator of Manageable entity classes. (commit: 035d4a6) (details)
7. [2.0.0-SNAPSHOT] Bump version to snapshot. (commit: ec0798b) (details)
8. [Enhancement #145] Use generated class instances instead of AspectJ-enhanced code to track changes and implement lazy loading. (commit: 0eeb6e7) (details)
9. [Enhancement #145] Running integration tests, fixing issues. (commit: 5aa1e1a) (details)
10. [Ref] Refactoring UoW tests. (commit: 21c24ec) (details)
11. [Ref] Refactor UoW tests. (commit: 12a2915) (details)
12. [Enhancement #145] Persist new objects to repository on commit. (commit: 992d5c2) (details)
13. [Fix] Fix transactional behavior in multiple inheritance integration tests. (commit: 0ea860a) (details)
14. [Ref] Remove duplicate method from UoW. (commit: 2f1f44c) (details)
15. [Enhancement #145] Remove remaining references to AspectJ. (commit: 884b43c) (details)
16. [Ref] Refactor UoW manageable-related methods to use FieldSpecification directly instead of Field (when possible). (commit: c942175) (details)
17. [Enhancement #145] Allow outputting generated entity classes for inspection. (commit: 3a8ca72) (details)
18. [Enhancement #145] Do not generate getters/setters for transient fields. (commit: 9a2f3dc) (details)
19. [Enhancement #145] Do not generate getter for identifier. (commit: 1675c45) (details)
20. Cleanup some disabled tests. (commit: 2bc537d) (details)
21. Run GH workflow on PR to a release-preparation branch. (commit: 8fc3711) (details)
22. [Enhancement #189] Allow ignoring inferred value removals on merge. (commit: 33e4070) (details)
23. [Enhancement #189] Add some integration tests for the feature. (commit: 0ac38d5) (details)
24. [Chore] Regenerate license headers. (commit: 7134f78) (details)
25. [Upd] Update RDF4J to 4.3.7. (commit: e5079b0) (details)
26. [1.1.4] Bump version, update changelog. (commit: 05038d1) (details)
27. [Fix] Revert maven-source-plugin to 3.2.1 due to build failures. (commit: 75dc712) (details)
28. [Enhancement #145] Refactor entity instantiation to prepare for introducing a generated subclass. (commit: da9089e) (details)
29. [Enhancement #145] Use generated class instances instead of AspectJ-enhanced code to track changes and implement lazy loading. (commit: 66c3a2e) (details)
30. [Enhancement #145] Running integration tests, fixing issues. (commit: b169180) (details)
31. [Fix] Post-merge fixes. (commit: b85a5c2) (details)
32. [Ref] Refactor Java transformation in OWL2Java. (commit: 5fd6a9f) (details)
33. [Enhancement #85] Add configuration of ontology prefix property. (commit: 62966d8) (details)
34. [Enhancement #85] Resolve prefixes from the available ontologies. (commit: f57f8af) (details)
35. [Enhancement #85] Improve Java name generation to handle empty IRI fragments and IRIs ending with slash. (commit: a85e4ac) (details)
36. [Enhancement #85] Disambiguate vocabulary constants by prepending ontology prefix. (commit: d44eef8) (details)
37. [Enhancement #85] Disambiguate generated class names using ontology prefix (if available). (commit: 840580b) (details)
38. [Enhancement #85] Allow forcing generation of vocabulary constants and entity class names with prefix. (commit: f15f71d) (details)
39. [Enhancement #85] Allow specifying ontology prefix mapping file in OWL2Java transformation. (commit: c871933) (details)
40. [Enhancement #85] Extend JOPA Maven plugin with parameters regarding ontology prefix processing configuration. (commit: cc34aab) (details)
41. [Enhancement #85] Attempt to resolve ontology prefix from prefix.cc when it is not declared. (commit: ec00100) (details)
42. [Enhancement #85] Enable generated prefixed names by default. (commit: d7c4070) (details)
43. [Enhancement #85] Sanitize prefixes as valid Java names. (commit: 34be8a7) (details)
44. [Enhancement #85] Do not generate prefixed vocabulary constants when prefix is not available. (commit: 337affd) (details)
45. [Enhancement #223] Make EntityManager and EntityManagerFactory AutoCloseable. (commit: 7f5348c) (details)
46. [Enhancement #146] Remove TransactionWrapper.java interface. (commit: f45f52a) (details)
47. [Enhancement #146] Remove ErrorUtils.java (commit: 5bd27ea) (details)
48. [Enhancement #146] Remove Session.java interface. (commit: 60dcb0c) (details)
49. [Enhancement #146] Simplify session classes. (commit: 62c258b) (details)
50. [Enhancement #146] Move internal API into the jopa-impl module. (commit: afde0ea) (details)
51. [Enhancement #146] Inline the ChangeManager, MergeManager and CloneBuilder interfaces. (commit: f3cf1a2) (details)
52. [Enhancement #146] Inline UnitOfWorkChangeSet and ChangeRecord. (commit: 7405dbb) (details)
53. [Ref] Reduce the use of UnitOfWorkImpl, replace it with UnitOfWork. (commit: 9f35738) (details)
54. [Ref] Reduce the use of UnitOfWorkImpl, replace it with UnitOfWork, part deux. (commit: 3d51a4c) (details)
55. [Ref] Reduce the use of UnitOfWorkImpl, replace it with UnitOfWork, part III. (commit: 81890c1) (details)
56. [Ref] Reduce the use of UnitOfWorkImpl, replace it with UnitOfWork, part IV. (commit: 5ef517c) (details)
57. [Enhancement #146] Cleanup exceptions in jopa-api, remove TODOs in EM and EMF. (commit: 57100ed) (details)
58. [Enhancement #146] Remove unused/unsupported API classes and annotations. (commit: 02d87a0) (details)
59. [Enhancement #146] Rename Sequence attributes to better correspond to Java naming conventions. (commit: 37d3c05) (details)
60. [Enhancement #146] Remove deprecated APIs. (commit: c431e62) (details)
61. [Enhancement #146] Remove the use of AccessController.doPrivileged. (commit: 19f3dc6) (details)
62. [GH#147] Switch to Java 17. (commit: 99cf8bf) (details)
63. [Upd] Update plugins - compiler, javadoc, jacoco, surefire. (commit: 61e1d12) (details)
64. [Ref] Minor refactoring utilizing update to Java 17. (commit: c170ddd) (details)
65. [Bug #227] Support new Spring Boot JAR structure when scanning classpath. (commit: ce8b608) (details)
66. Update changelog based on development branch. (commit: 5d0e185) (details)
67. [Enhancement #246] Update API of ListAttribute to correspond to the Sequence annotation. (commit: 6a3c641) (details)
68. [Enhancement #51] Add RDFCollection annotation for marking RDF collection attributes. (commit: 4e00efa) (details)
69. [Enhancement #51] Extend metamodel with RDFCollectionAttribute. (commit: 9136db6) (details)
70. [Enhancement #51] Extract list descriptor creation into a separate factory class. (commit: 75f3713) (details)
71. [Enhancement #51] Extend list attribute metamodel with isRDFCollection method. (commit: 2bc9e5b) (details)
72. [Enhancement #51] Extend OntoDriver ListDescriptors with attribute indicating nil termination. (commit: d2cb447) (details)
73. [Enhancement #51] Implement handling of nil-terminated referenced lists in RDF4J driver. (commit: 7211d50) (details)
74. [Enhancement #51] Ensure list attribute metamodel does not throw NPX on sequence type query. (commit: 7191274) (details)
75. [Enhancement #51] Add integration tests for RDF collection attributes. (commit: a41653b) (details)
76. [Enhancement #51] Implement handling of nil-terminated referenced lists in Jena driver. (commit: b08301b) (details)
77. [Enhancement #51] Nil-terminated referenced RDF lists are not supported in OWL API driver. (commit: e5e9e1c) (details)
78. [Enhancement #231] Refactor RDF4J driver to apply transactional changes directly to repository instead of gathering them in local model. (commit: 09d2560) (details)
79. [Enhancement #231] Allow configuring RDF4J transaction isolation level for RDF4J driver. (commit: d08396b) (details)
80. [Enhancement #231] Allow configuring transactional change tracking mode. (commit: 33b95a0) (details)
81. [Enhancement #231] Refactor UnitOfWorkImpl into a common AbstractUnitOfWork and ChangeTrackingUnitOfWork. (commit: e4b6c46) (details)
82. Allow publishing snapshot builds to GitHub packages. (commit: 233232a) (details)
83. [Enhancement #231] Implement a version of UnitOfWork that calculates changes on commit and propagates them to the storage. (commit: 9ee732d) (details)
84. [Enhancement #231] Refactor UnitOfWork tests to test both implementations. (commit: 8b78ccd) (details)
85. [Ref] Refactor indirect wrappers to indicate that they are used to propagate changes to the persistence context. (commit: 318ef81) (details)
86. [Enhancement #231] Implement LazyLoadingListProxy. (commit: a78ddab) (details)
87. [Ref] Rename adapters package to proxy. (commit: 8567f1b) (details)
88. [Enhancement #231] Add LazyLoadingSetProxy, refactor LazyLoadingCollectionProxy to contain common functionality. (commit: e2f3bb0) (details)
89. [Enhancement #231] Incorporate lazy loading proxies into clone building (WIP). (commit: 4f7beb7) (details)
90. [Enhancement #231] Fix issues caused by the new LazyLoadingCollectionProxy implementation for lazily loaded collection attributes. (commit: e55313d) (details)
91. [Enhancement #231] Implement LazyLoadingMapProxy. (commit: 8c472d1) (details)
92. [Enhancement #231] Trigger lazy loading for all attributes of already managed instance before merge. (commit: bd4a0ef) (details)
93. [Enhancement #231] Implemented generation of lazy loading entity proxies. (commit: f50faf5) (details)
94. [Enhancement #231] Cache generated lazy loading proxy classes. (commit: 478f4c2) (details)
95. [Enhancement #231] Fix issues caused by introducing lazy loading proxies (WIP). (commit: 074df8c) (details)
96. [Fix] Merge subject contexts and types contexts when building axiom descriptor for entity load. (commit: a2b1856) (details)
97. [Enhancement #231] Refactor original generation on new object persist to support non-empty collection attributes. (commit: 42c7122) (details)
98. [Enhancement #231] Treat lazy loading proxy as equal to null when calculating changes. (commit: 895db79) (details)
99. [Enhancement #231] Ensure changes made be PreUpdate callbacks are propagated to repo on commit (commit: 3644005) (details)
100. Allow publishing snapshot builds to GitHub packages. (commit: 597155f) (details)
101. [Fix] Prevent SO when logging entity that is being processed. (commit: 753860a) (details)
102. Support publishing snapshots to GH. (commit: 1f764ce) (details)
103. Refactor field strategies to support processing lazily loaded values directly. (commit: 3bf51b2) (details)
104. [Ref] Refactor utility value objects into a separate package. (commit: 78e14c0) (details)
105. Start refactoring load state descriptors to be populated when entity is loaded. (commit: 4ea7a56) (details)
106. Clone and register LoadStateDescriptor when cloning entity. (commit: 5d3abd4) (details)
107. Fix failing tests in jopa-impl after changes to load state tracking. (commit: abafbef) (details)
108. Additional fixes for issues caused by changes to load state tracking. (commit: 4e48210) (details)
109. Update load state descriptor of cached instance on change merge. (commit: f811e1d) (details)
110. Fix overwritten load state descriptor in UoW. (commit: 9c4e8c9) (details)
111. Do not use null for collections when replacing lazy loading proxies on entity detach. (commit: 3150779) (details)
112. Make types by default eagerly fetched. (commit: 2362e72) (details)
113. [Fix] Skip calculating changes on field when clone value is lazy loading proxy and original is empty collection. (commit: f9baf8a) (details)
114. Add a lazy loading proxies utility class. (commit: eb221d9) (details)
115. Prevent repeated loading trigger on LazyLoadingProxy by storing a reference on the loaded object. (commit: 3d82eb6) (details)
116. [Doc] Minor fixes in Javadoc of JOPALazyUtils. (commit: 72e88cd) (details)
117. Modify UpdateWithInferenceRunner to handle both supported change tracking strategies. (commit: 047fb1d) (details)
118. [Upd] Update to Jena 5.0.0 and RDF4J 4.3.11. (commit: 8ed08e1) (details)
119. Always fetch types and data properties eagerly. (commit: 8290451) (details)
120. [2.0.0] Bump version, update changelog and readme. (commit: 18a01d4) (details)

[Upd] Update Antlr, remove dependency on JGraphT.

The JGraphT dependency is needed by OWL API reasoners, Openllet contains it so there is no need to include it in JOPA impl.
 (commit: 33b2290)

[Enhancement #145] Add dependency on ByteBuddy.
 (commit: f3f19ba)

[Enhancement #145] Extract Manageable interface into its own file.
 (commit: 5d99b52)

[Enhancement #145] Implement POC of generating entity classes using ByteBuddy.
 (commit: abdd95e)

[Enhancement #145] Refactor entity instantiation to prepare for introducing a generated subclass.
 (commit: 0149a66)

[Enhancement #145] Add generator of Manageable entity classes.
 (commit: 035d4a6)

[2.0.0-SNAPSHOT] Bump version to snapshot.
 (commit: ec0798b)

[Enhancement #145] Use generated class instances instead of AspectJ-enhanced code to track changes and implement lazy loading.
 (commit: 0eeb6e7)

[Enhancement #145] Running integration tests, fixing issues.

Removed AspectJ maven plugin from integration test builds.
 (commit: 5aa1e1a)

[Ref] Refactoring UoW tests.
 (commit: 21c24ec)

[Ref] Refactor UoW tests.
 (commit: 12a2915)

[Enhancement #145] Persist new objects to repository on commit.

This ensures changes made after em.persist and commit are saved without any special treatment.
 (commit: 992d5c2)

[Fix] Fix transactional behavior in multiple inheritance integration tests.
 (commit: 0ea860a)

[Ref] Remove duplicate method from UoW.
 (commit: 2f1f44c)

[Enhancement #145] Remove remaining references to AspectJ.
 (commit: 884b43c)

[Ref] Refactor UoW manageable-related methods to use FieldSpecification directly instead of Field (when possible).
 (commit: c942175)

[Enhancement #145] Allow outputting generated entity classes for inspection.

Configurable via properties passed to PU.
 (commit: 3a8ca72)

[Enhancement #145] Do not generate getters/setters for transient fields.

Also skip methods that look like getters/setters but do not have a corresponding field.
 (commit: 9a2f3dc)

[Enhancement #145] Do not generate getter for identifier.

Identifier is never lazily loaded, so there is no need to generate a getter with interceptor for it.
 (commit: 1675c45)

Cleanup some disabled tests.
 (commit: 2bc537d)

Run GH workflow on PR to a release-preparation branch.
 (commit: 8fc3711)

[Enhancement #189] Allow ignoring inferred value removals on merge.

Enabled via configuration, default behavior is to throw an exception on such changes.
 (commit: 33e4070)

[Enhancement #189] Add some integration tests for the feature.
 (commit: 0ac38d5)

[Chore] Regenerate license headers.

Use regular block comment format instead of Javadoc to prevent IDEs from reformatting the header every time the code is formatted. This should reduce formatting changes in PRs.
 (commit: 7134f78)