Changes

[Fix #240] Rename inCommit to flushingChanges and set it even when writing uncommitted changes in UoW.

Fixes issue with em.flush when a new object was persisted.
 (commit: d70adb2)

[Doc] Update Javadoc of UoW.isFlushingChanges.
 (commit: 3846457)

[SCA] SCA-based code improvements.
 (commit: 86ca103)

[Bug #234] Fix an issue with using entity id comparison after attribute referencing another entity in SOQL query.
 (commit: 5e01614)

[Perf] Optimize classpath processing by skipping JAR files that have already been processed.

This is mostly relevant to Spring Boot nested JARs which all map to the same root application JAR, but are processed repeatedly (for each nested JAR). This optimization will skip these repeated process calls.
 (commit: 492bcf1)

[Enhancement #233] Implement generator of entity reference proxy classes.
 (commit: ed78b11)

[Enhancement #233] Provide access to entity reference proxy classes in MetamodelImpl.
 (commit: ceeea3b)

[Enhancement #233] Create entity reference proxy in OOM and return it to UoW.
 (commit: 50ba797)

[Enhancement #233] Integrate new getReference implementation into UoW.

Testing getReference implementation for both types of UnitOfWork.
 (commit: a13c803)

[Enhancement #233] Ensure correct handling of reference change merging w.r.t. second-level cache.
 (commit: 14b596b)

Re-enable several disabled tests, ensure they pass.
 (commit: 971c655)

Re-enable one more disabled integration test.
 (commit: 139acde)

[Enhancement #243] Log JOPA version info on PU start.
 (commit: d6f0e77)

[Enhancement #243] Simplify generation of version number in OWL2Java.
 (commit: 1246c77)

[Bug #248] Add test reproducing the issue.
 (commit: 8f49499)

[Bug #248] Ignore merge cascading of lazy loading proxy instances.
 (commit: 7764609)

[Bug #248] Handle cascade refresh/detach w.r.t. lazy loading proxies.
 (commit: 8c326bc)

[Bug #248] Handle cascade remove w.r.t. lazy loading proxies.

Remove cascading on lazily loaded relationship triggers loading and then cascades the remove operation.
 (commit: 75022b8)

[Upd] Update to RDF4J 4.3.12.
 (commit: 9263808)

[2.0.1] Bump version, update changelog.
 (commit: 8a03bbf)